Analysis Platform

Comparative Analysis Dashboard

Upload assemblies, configure parameters, and execute genomic comparison pipelines against curated reference databases.

System Job Overview
Live Status
Total Analyses
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Active Jobs
0
Queued Jobs
0
System Health
Optimal
Quick Resume Analysis
Retrieve the status or details of any previously completed comparative job.
Upload Genome FASTA

Upload your genome sequence file in FASTA format to run comparisons against reference databases.

CDS (Coding Sequences)
Pre-predicted coding sequences (FASTA format containing genes/proteins).
Genome Assembly Recommended
Raw draft assembly FASTA file. Will automatically execute Prokka for gene calling.
Drag & drop your FASTA file here, or click to browseSupports .fasta, .fa, .fna (Max: 20MB)
Select Species and Pan-Genome

Choose the species and pan-genome reference database for comparative analysis. Select a species first to see available pan-genomes.

Type or select species...
Selecting a species automatically loads its pan-genome references.
Run Comparison

Start the pan-genome comparison using your query genome and selected database. This compares your sequence against the references to identify core, accessory, and unique genes.

Optimised for standard bacterial CDS generation: fast mode, no rRNA/tRNA search, centre X, increment 1.

Stage 1: K-mer Filtering
Stage 2: Nucleotide Alignment Validation
Stage 3: Protein-Level Validation
Optional Processing Pipelines
Secure sandboxed biological calculation